назад
BLASTN 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
(76 letters)
Database: bs
21 sequences; 4,215,470 total letters
Searching.done
Score E
Sequences producing significant alignments: (bits) Value
Z99113 Z99113 Bacillus subtilis complete genome (section 10 of 2... 30 0.21
Z99123 Z99123 Bacillus subtilis complete genome (section 20 of 2... 28 0.82
Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 2... 28 0.82
Z99115 Z99115 Bacillus subtilis complete genome (section 12 of 2... 28 0.82
Z99108 Z99108 Bacillus subtilis complete genome (section 5 of 21... 28 0.82
Z99104 Z99104 Bacillus subtilis complete genome (section 1 of 21... 28 0.82
Z99124 Z99124 Bacillus subtilis complete genome (section 21 of 2... 26 3.2
Z99121 Z99121 Bacillus subtilis complete genome (section 18 of 2... 26 3.2
Z99112 Z99112 Bacillus subtilis complete genome (section 9 of 21... 26 3.2
>Z99113 Z99113 Bacillus subtilis complete genome (section 10 of 21):
from 1807106 to 2014934.
Length = 207829
Score = 30.2 bits (15), Expect = 0.21
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 actgttaatccgtat 45
|||||||||||||||
Sbjct: 39866 actgttaatccgtat 39880
>Z99123 Z99123 Bacillus subtilis complete genome (section 20 of 21):
from 3809641 to 4010779.
Length = 201139
Score = 28.2 bits (14), Expect = 0.82
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 ctgttaatccgtat 45
||||||||||||||
Sbjct: 68560 ctgttaatccgtat 68573
>Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 21): from
3013458 to 3213379.
Length = 199922
Score = 28.2 bits (14), Expect = 0.82
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 51 tggttcgagtccagtcag 68
||||||||||||| ||||
Sbjct: 157770 tggttcgagtccattcag 157753
>Z99115 Z99115 Bacillus subtilis complete genome (section 12 of 21): from
2207806 to 2409180.
Length = 201375
Score = 28.2 bits (14), Expect = 0.82
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 gaacggcggactgt 35
||||||||||||||
Sbjct: 113994 gaacggcggactgt 113981
>Z99108 Z99108 Bacillus subtilis complete genome (section 5 of 21): from
813670 to 1011078.
Length = 197409
Score = 28.2 bits (14), Expect = 0.82
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 25 cggcggactgttaatccg 42
||||||||||| ||||||
Sbjct: 137997 cggcggactgtaaatccg 138014
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 22 gaacggcggactg 34
|||||||||||||
Sbjct: 112969 gaacggcggactg 112981
>Z99104 Z99104 Bacillus subtilis complete genome (section 1 of 21): from 1
to 213080.
Length = 213080
Score = 28.2 bits (14), Expect = 0.82
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 25 cggcggactgttaatccg 42
||||||||||| ||||||
Sbjct: 194472 cggcggactgtaaatccg 194489
Score = 28.2 bits (14), Expect = 0.82
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 51 tggttcgagtccagtcag 68
||||||||||||| ||||
Sbjct: 31981 tggttcgagtccactcag 31998
Score = 28.2 bits (14), Expect = 0.82
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 51 tggttcgagtccagtcag 68
||||||||||||| ||||
Sbjct: 11513 tggttcgagtccactcag 11530
>Z99124 Z99124 Bacillus subtilis complete genome (section 21 of 21): from
4010730 to 4214630.
Length = 203901
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 25 cggcggactgtta 37
|||||||||||||
Sbjct: 142087 cggcggactgtta 142099
>Z99121 Z99121 Bacillus subtilis complete genome (section 18 of 21): from
3414339 to 3609030.
Length = 194692
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 59 gtccagtcagagg 71
|||||||||||||
Sbjct: 192531 gtccagtcagagg 192519
>Z99112 Z99112 Bacillus subtilis complete genome (section 9 of 21): from
1602883 to 1807145.
Length = 204263
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 33 tgttaatccgtat 45
|||||||||||||
Sbjct: 118827 tgttaatccgtat 118815
Database: bs
Posted date: Nov 9, 2006 7:50 PM
Number of letters in database: 4,215,470
Number of sequences in database: 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59
Number of Sequences: 21
Number of extensions: 59
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 76
length of database: 4,215,470
effective HSP length: 14
effective length of query: 62
effective length of database: 4,215,176
effective search space: 261340912
effective search space used: 261340912
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)